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Download.Files.Biopython 1.75.biopython-1.75.tar.gz 16Mb – Source Tarball biopython-1.75.zip 17Mb – Source Zip File Pre-compiled wheel files on PyPI.Installation Instructions.Recent versions of Python (starting with Python 2.7.9 and Python 3.4) include the Python package management tool pip , which allows an easy installation from the command line on all platforms. Try:For updating an older version of Biopython try:This will remove older versions of Biopython and NumPy before it installs the recent versions.Should you wish to uninstall Biopython:If pip is not already installed you may need to update your Python, but first try:If you need to install under a specific version of Python, try something like this:On Windows , by default python and pip are not on the PATH . You can re-install Python and tick this option, or give the full path instead. Try something like this, depending on where your copy of Python is installed:Other packages.While we generally recommend using pip to install Biopython using the wheel packages we provide on PyPI (as above), there are also Biopython packages for Conda, Linux, etc.Installation from Source.Installation from source requires an appropriate C compiler, for example GCC on Linux , and MSVC on Windows . For Mac OS X , or as it is now branded, macOS , if you want to compile Biopython from source you will need to have installed Apple’s command line tools, which can de done with the terminal command:This will offer to install Apple’s XCode development suite - you can, but it is not needed and takes a lot of disk space.You can then download and unzip a Biopython source code release, or get our code from GitHub. Then run:If you are still stuck, sign up to the Biopython mailing list and ask for help there.Required Software.Python 2.7, 3.4, 3.5, 3.6, or 3.7 or PyPy, including the Python development header files like python.h C compiler (if compiling from source) You need a C compiler supported by setuptools , gcc will work fine on UNIX-like platforms. This is not needed on Windows if using the compiled packages provided. On Mac OS, you should install Apple’s the compiler tools as described above. NumPy (Numerical Python).Optional Software.Some parts of Biopython use the following additional python libraries:ReportLab – used for pdf graphics code psycopg – used for BioSQL with a PostgreSQL database mysql-connector – used for BioSQL with a MySQL database MySQLdb – An alternative MySQL library used by BioSQL.In addition Biopython includes wrapper code for calling a number of third party command line tools including:Wise2 – for command line tool dnal NCBI Standalone BLAST – command line tool for running BLAST on your local machine Clustalw – command line tool for building sequence alignments SIMCOAL2 and FDist – command line tools for population genetics EMBOSS – lots of useful command line tools.Old Releases.Recent releases of Biopython require NumPy (and not Numeric):biopython-1.74.tar.gz 16Mb – Source Tarball biopython-1.74.zip 17Mb – Source Zip File Pre-compiled wheel files on PyPI biopython-1.73.tar.gz 15Mb – Source Tarball (18 December 2018) biopython-1.73.zip 17Mb – Source Zip File Pre-compiled wheel files on PyPI biopython-1.72.tar.gz 16Mb – Source Tarball (27 June 2018) biopython-1.72.zip 17Mb – Source Zip File Pre-compiled wheel files on PyPI biopython-1.71.tar.gz 16Mb – Source Tarball (4 April 2018) biopython-1.71.zip 17Mb – Source Zip File Pre-compiled wheel files on PyPI biopython-1.70.tar.gz 15Mb – Source Tarball (11 July 2017) biopython-1.70.zip 16Mb – Source Zip File Pre-compiled wheel files on PyPI biopython-1.69.tar.gz 15Mb – Source Tarball (7 April 2017) biopython-1.69.zip 16Mb – Source Zip File biopython-1.69.win32-py2.7.exe 2Mb – 32 bit Windows .exe Installer for Python 2.7 and NumPy 1.11.0 biopython-1.69.win32-py2.7.msi 2Mb – 32 bit Windows .msi Installer for Python 2.7 and NumPy 1.11.0 biopython-1.69.win32-py3.3.exe 2Mb – 32 bit Windows .exe Installer for Python 3.3 and NumPy 1.10.2 biopython-1.69.win32-py3.3.msi 2Mb – 32 bit Windows .msi Installer for Python 3.3 and NumPy 1.10.2 biopython-1.69.win32-py3.4.exe 2Mb – 32 bit Windows .exe Installer for Python 3.4 and NumPy 1.11.0 biopython-1.69.win32-py3.4.msi 2Mb – 32 bit Windows .msi Installer for Python 3.4 and NumPy 1.11.0 biopython-1.69.win32-py3.5.exe 3Mb – 32 bit Windows .exe Installer for Python 3.5 and NumPy 1.11.1 biopython-1.69.win32-py3.5.msi 3Mb – 32 bit Windows .msi Installer for Python 3.5 and NumPy 1.11.1 biopython-1.69.win32-py3.6.exe 2Mb – 32 bit Windows .exe Installer for Python 3.6 and NumPy 1.11.3 biopython-1.69.win32-py3.6.msi 2Mb – 32 bit Windows .msi Installer for Python 3.6 and NumPy 1.11.3 biopython-1.68.tar.gz 14Mb – Source Tarball (26 August 2016) biopython-1.68.zip 15Mb – Source Zip File biopython-1.68.win32-py2.6.exe 2Mb – 32 bit Windows .exe Installer for Python 2.6 and NumPy 1.8.2 biopython-1.68.win32-py2.7.exe 2Mb – 32 bit Windows .exe Installer for Python 2.7 and NumPy 1.11.0 biopython-1.68.win32-py2.7.msi 2Mb – 32 bit Windows .msi Installer for Python 2.7 and NumPy 1.11.0 biopython-1.68.win32-py3.3.exe 2Mb – 32 bit Windows .exe Installer for Python 3.3 and NumPy 1.10.2 biopython-1.68.win32-py3.3.msi 2Mb – 32 bit Windows .msi Installer for Python 3.3 and NumPy 1.10.2 biopython-1.68.win32-py3.4.exe 2Mb – 32 bit Windows .exe Installer for Python 3.4 and NumPy 1.11.0 biopython-1.68.win32-py3.4.msi 2Mb – 32 bit Windows .msi Installer for Python 3.4 and NumPy 1.11.0 biopython-1.68.win32-py3.5.exe 2Mb – 32 bit Windows .exe Installer for Python 3.5 and NumPy 1.11.1 biopython-1.68.win32-py3.5.msi 2Mb – 32 bit Windows .msi Installer for Python 3.5 and NumPy 1.11.1 biopython-1.67.tar.gz 14Mb – Source Tarball (8 June 2016) biopython-1.67.zip 15Mb – Source Zip File biopython-1.67.win32-py2.6.exe 2Mb – 32 bit Windows .exe Installer for Python 2.6 and NumPy 1.8.2 biopython-1.67.win32-py2.6.msi 2Mb – 32 bit Windows .msi Installer for Python 2.6 and NumPy 1.8.2 biopython-1.67.win32-py2.7.exe 2Mb – 32 bit Windows .exe Installer for Python 2.7 and NumPy 1.9.1 biopython-1.67.win32-py2.7.msi 2Mb – 32 bit Windows .exe Installer for Python 2.7 and NumPy 1.9.1 biopython-1.67.win32-py3.3.exe 2Mb – 32 bit Windows .exe Installer for Python 3.3 and NumPy 1.9.1 biopython-1.67.win32-py3.3.msi 2Mb – 32 bit Windows .exe Installer for Python 3.3 and NumPy 1.9.1 biopython-1.67.win32-py3.4.exe 2Mb – 32 bit Windows .exe Installer for Python 3.4 and NumPy 1.9.1 biopython-1.67.win32-py3.4.msi 2Mb – 32 bit Windows .msi Installer for Python 3.4 and NumPy 1.9.1 biopython-1.67.win32-py3.5.exe 2Mb – 32 bit Windows .exe Installer for Python 3.4 and NumPy 1.9.3 biopython-1.67.win32-py3.5.msi 2Mb – 32 bit Windows .msi Installer for Python 3.4 and NumPy 1.9.3 biopython-1.66.tar.gz 14Mb – Source Tarball (21 October 2015) biopython-1.66.zip 15Mb – Source Zip File biopython-1.66.win32-py2.6.exe 2Mb – 32 bit Windows .exe Installer for Python 2.6 and NumPy 1.8.2 biopython-1.66.win32-py2.7.exe 2Mb – 32 bit Windows .exe Installer for Python 2.7 and NumPy 1.9.1 biopython-1.66.win32-py3.3.exe 2Mb – 32 bit Windows .exe Installer for Python 3.3 and NumPy 1.9.1 biopython-1.66.win32-py3.4.exe 2Mb – 32 bit Windows .exe Installer for Python 3.4 and NumPy 1.9.1 biopython-1.66.win32-py3.5.exe 2Mb – 32 bit Windows .exe Installer for Python 3.5 biopython-1.66.win32-py3.5.msi 2Mb – 32 bit Windows .msi Installer for Python 3.5 biopython-1.65.tar.gz 13Mb – Source Tarball (17 December 2014) biopython-1.65.zip 14Mb – Source Zip File biopython-1.65.win32-py2.6.exe 2Mb – 32 bit Windows Installer for Python 2.6 and NumPy 1.8.2 biopython-1.65.win32-py2.7.exe 2Mb – 32 bit Windows Installer for Python 2.7 and NumPy 1.9.1 biopython-1.65.win32-py3.3.exe 2Mb – 32 bit Windows Installer for Python 3.3 and NumPy 1.9.1 biopython-1.65.win32-py3.4.exe 2Mb – 32 bit Windows Installer for Python 3.4 and NumPy 1.9.1 biopython-1.64.tar.gz 12Mb – Source Tarball (29 May 2014) biopython-1.64.zip 13Mb – Source Zip File biopython-1.64.win32-py2.6.exe 2Mb – 32 bit Windows Installer for Python 2.6 and NumPy 1.8.1 biopython-1.64.win32-py2.7.exe 2Mb – 32 bit Windows Installer for Python 2.7 and NumPy 1.8.1 biopython-1.64.win32-py3.3.exe 2Mb – 32 bit Windows Installer for Python 3.3 and NumPy 1.8.1 biopython-1.64.win32-py3.4.exe 2Mb – 32 bit Windows Installer for Python 3.4 and NumPy 1.8.1 biopython-1.63.tar.gz 11Mb – Source Tarball (6 December 2013) biopython-1.63.zip 12Mb – Source Zip File biopython-1.63.win32-py2.6.exe 2Mb – 32 bit Windows Installer for Python 2.6 and NumPy 1.7 biopython-1.63.win32-py2.7.exe 2Mb – 32 bit Windows Installer for Python 2.7 and NumPy 1.7 biopython-1.63.win32-py3.3.exe 2Mb – 32 bit Windows Installer for Python 3.3 and NumPy 1.7 biopython-1.63b.tar.gz 11,123 Kb – Source Tarball ( beta release , 12 November 2013) biopython-1.63b.zip 12,111 Kb – Source Zip File biopython-1.63b.win32-py2.6.exe 1,877 Kb – 32 bit Windows Installer for Python 2.6 and NumPy 1.7 biopython-1.63b.win32-py2.7.exe 2,003 Kb – 32 bit Windows Installer for Python 2.7 and NumPy 1.7 biopython-1.63b.win32-py3.3.exe 2,005 Kb – 32 bit Windows Installer for Python 3.3 and NumPy 1.7 biopython-1.62.tar.gz 11,123 Kb – Source Tarball (28 August 2013) biopython-1.62.zip 12,111 Kb – Source Zip File biopython-1.62.win32-py2.5.exe 1,852 Kb – 32 bit Windows Installer for Python 2.5 and NumPy 1.1 biopython-1.62.win32-py2.6.exe 1,877 Kb – 32 bit Windows Installer for Python 2.6 and NumPy 1.3 biopython-1.62.win32-py2.7.exe 2,003 Kb – 32 bit Windows Installer for Python 2.7 and NumPy 1.5 biopython-1.62.win32-py3.3.exe 2,005 Kb – 32 bit Windows Installer for Python 3.3 and NumPy 1.7 biopython-1.62b.tar.gz 10,658 Kb – Source Tarball ( beta release , 15 July 2013) biopython-1.62b.zip 11,607 Kb – Source Zip File biopython-1.62b.win32-py2.5.exe 1,661 Kb – 32 bit Windows Installer for Python 2.5 and NumPy 1.1 biopython-1.62b.win32-py2.6.exe 1,686 Kb – 32 bit Windows Installer for Python 2.6 and NumPy 1.3 biopython-1.62b.win32-py2.7.exe 1,813 Kb – 32 bit Windows Installer for Python 2.7 and NumPy 1.5 biopython-1.62b.win32-py3.3.exe 1,814 Kb – 32 bit Windows Installer for Python 3.3 and NumPy 1.7 biopython-1.61.tar.gz 10,311 Kb – Source Tarball (5 February 2013) biopython-1.61.zip 11,198 Kb – Source Zip File biopython-1.61.win32-py2.5.exe 1,612 Kb – 32 bit Windows Installer for Python 2.5 and NumPy 1.1 biopython-1.61.win32-py2.6.exe 1,637 Kb – 32 bit Windows Installer for Python 2.6 and NumPy 1.3 biopython-1.61.win32-py2.7.exe 1,764 Kb – 32 bit Windows Installer for Python 2.7 and NumPy 1.5 biopython-1.61.win32-py3.2-beta.exe 1,757 Kb – 32 bit Windows Installer for Python 3.2 and NumPy 1.5 ( beta status for testing) biopython-1.61.win32-py3.3-beta.exe 1,750 Kb – 32 bit Windows Installer for Python 3.3 and NumPy 1.7 ( beta status for testing) biopython-1.60.tar.gz 9,280 Kb – Source Tarball (25 June 2012) biopython-1.60.zip 10,051 Kb – Source Zip File biopython-1.60.win32-py2.5.exe 1,469 Kb – 32 bit Windows Installer for Python 2.5 and NumPy 1.1 biopython-1.60.win32-py2.6.exe 1,492 Kb – 32 bit Windows Installer for Python 2.6 and NumPy 1.3 biopython-1.60.win32-py2.7.exe 1,1618 Kb – 32 bit Windows Installer for Python 2.7 and NumPy 1.5 biopython-1.60.win32-py3.2-beta.exe 1,611 Kb – 32 bit Windows Installer for Python 3.2 and NumPy 1.5 ( beta status for testing) biopython-1.59.tar.gz 8,377 Kb – Source Tarball (24 February 2012) biopython-1.59.zip 9,127 Kb – Source Zip File biopython-1.59.win32-py2.5.exe 1,440 Kb – 32 bit Windows Installer for Python 2.5 and NumPy 1.1 biopython-1.59.win32-py2.6.exe 1,463 Kb – 32 bit Windows Installer for Python 2.6 and NumPy 1.3 biopython-1.59.win32-py2.7.exe 1,590 Kb – 32 bit Windows Installer for Python 2.7 and NumPy 1.5 biopython-1.58.tar.gz 7,847 Kb – Source Tarball (18 August 2011) biopython-1.58.zip 8,474 Kb – Source Zip File biopython-1.58.win32-py2.4-unsupported.exe 1,427 Kb – 32 bit Windows Installer for Python 2.4 (which we no longer officially support) and NumPy 1.1 biopython-1.58.win32-py2.5.exe 1,428 Kb – 32 bit Windows Installer for Python 2.5 and NumPy 1.1 biopython-1.58.win32-py2.6.exe 1,450 Kb – 32 bit Windows Installer for Python 2.6 and NumPy 1.3 biopython-1.58.win32-py2.7.exe 1,577 Kb – 32 bit Windows Installer for Python 2.7 and NumPy 1.5 biopython-1.57.tar.gz 6,783 Kb – Source Tarball (2 April 2011) biopython-1.57.zip 7,446 Kb – Source Zip File biopython-1.57.win32-py2.4-unsupported.exe 1,405 Kb – 32 bit Windows Installer for Python 2.4 (which we no longer officially support) and NumPy 1.1 biopython-1.57.win32-py2.5.exe 1,405 Kb – 32 bit Windows Installer for Python 2.5 and NumPy 1.1 biopython-1.57.win32-py2.6.exe 1,428 Kb – 32 bit Windows Installer for Python 2.6 and NumPy 1.3 biopython-1.57.win32-py2.7.exe 1,555 Kb – 32 bit Windows Installer for Python 2.7 and NumPy 1.5 biopython-1.56.tar.gz 6,778 Kb – Source Tarball (26 November 2010) biopython-1.56.zip 7,347 Kb – Source Zip File biopython-1.56.win32-py2.4.exe 1,429 Kb – 32 bit Windows Installer for Python 2.4 and NumPy 1.1 biopython-1.56.win32-py2.5.exe 1,429 Kb – 32 bit Windows Installer for Python 2.5 and NumPy 1.1 biopython-1.56.win32-py2.6.exe 1,451 Kb – 32 bit Windows Installer for Python 2.6 and NumPy 1.3 biopython-1.56.win32-py2.7.exe 1,578 Kb – 32 bit Windows Installer for Python 2.7 and NumPy 1.5 biopython-1.55.tar.gz 6,493 Kb – Source Tarball (31 August 2010) biopython-1.55.zip 7,058 Kb – Source Zip File biopython-1.55.win32-py2.4.exe 1,448 Kb – 32 bit Windows Installer for Python 2.4 and NumPy 1.1 biopython-1.55.win32-py2.5.exe 1,449 Kb – 32 bit Windows Installer for Python 2.5 and NumPy 1.1 biopython-1.55.win32-py2.6.exe 1,471 Kb – 32 bit Windows Installer for Python 2.6 and NumPy 1.3 biopython-1.55.win32-py2.7.exe 1,598 Kb – 32 bit Windows Installer for Python 2.7 and NumPy 1.5 biopython-1.55b.tar.gz 6,428 Kb – Source Tarball (August 18, 2010) biopython-1.55b.zip 6,996 Kb – Source Zip File biopython-1.55b.win32-py2.4.exe 1,451 Kb – 32 bit Windows Installer for Python 2.4 and NumPy 1.1 biopython-1.55b.win32-py2.5.exe 1,451 Kb – 32 bit Windows Installer for Python 2.5 and NumPy 1.1 biopython-1.55b.win32-py2.6.exe 1,474 Kb – 32 bit Windows Installer for Python 2.6 and NumPy 1.3 biopython-1.54.tar.gz 6,295 Kb – Source Tarball (May 20, 2010) biopython-1.54.zip 6,859 Kb – Source Zip File biopython-1.54.win32-py2.4.exe 1,434 Kb – 32 bit Windows Installer for Python 2.4 and NumPy 1.1 biopython-1.54.win32-py2.5.exe 1,434 Kb – 32 bit Windows Installer for Python 2.5 and NumPy 1.1 biopython-1.54.win32-py2.6.exe 1,457 Kb – 32 bit Windows Installer for Python 2.6 and NumPy 1.3 biopython-1.54b.tar.gz 6,554 Kb – Source Tarball (April 2, 2010) biopython-1.54b.zip 7,118 Kb – Source Zip File biopython-1.54b.win32-py2.4.exe 1,426 Kb – 32 bit Windows Installer for Python 2.4 and NumPy 1.1 biopython-1.54b.win32-py2.5.exe 1,427 Kb – 32 bit Windows Installer for Python 2.5 and NumPy 1.1 biopython-1.54b.win32-py2.6.exe 1,456 Kb – 32 bit Windows Installer for Python 2.6 and NumPy 1.3 biopython-1.53.tar.gz 4,185 Kb – Source Tarball (December 15, 2009) biopython-1.53.zip 4,652 Kb – Source Zip File biopython-1.53.win32-py2.4.exe 1,129 Kb – 32 bit Windows Installer for Python 2.4 and NumPy 1.1 biopython-1.53.win32-py2.5.exe 1,130 Kb – 32 bit Windows Installer for Python 2.5 and NumPy 1.1 biopython-1.53.win32-py2.6.exe 1,155 Kb – 32 bit Windows Installer for Python 2.6 and NumPy 1.3 biopython-1.52.tar.gz 5,486 Kb – Source Tarball (September 22, 2009) biopython-1.52.zip 5,930 Kb – Source Zip File biopython-1.52.win32-py2.4.exe 1,107 Kb – 32 bit Windows Installer for Python 2.4 and NumPy 1.1 biopython-1.52.win32-py2.5.exe 1,108 Kb – 32 bit Windows Installer for Python 2.5 and NumPy 1.1 biopython-1.52.win32-py2.6.exe 1,147 Kb – 32 bit Windows Installer for Python 2.6 and NumPy 1.3 biopython-1.51.tar.gz 5,428 Kb – Source Tarball (August 17, 2009) biopython-1.51.zip 5,922 Kb – Source Zip File biopython-1.51.win32-py2.4.exe 1,166 Kb – Windows Installer for Python 2.4 and NumPy 1.1 biopython-1.51.win32-py2.5.exe 1,167 Kb – Windows Installer for Python 2.5 and NumPy 1.1 biopython-1.51.win32-py2.6.exe 1,206 Kb – Windows Installer for Python 2.6 and NumPy 1.3 biopython-1.51b.tar.gz 5,172 Kb – Source Tarball (June 23, 2009) biopython-1.51b.zip 5,605 Kb – Source Zip File biopython-1.51b.win32-py2.4.exe 1,161 Kb – Windows Installer for Python 2.4 and NumPy 1.1 biopython-1.51b.win32-py2.5.exe 1,161 Kb – Windows Installer for Python 2.5 and NumPy 1.1 biopython-1.51b.win32-py2.6.exe 1,199 Kb – Windows Installer for Python 2.6 and NumPy 1.3 biopython-1.50.tar.gz 4,550 Kb – Source Tarball (April 20, 2009) biopython-1.50.zip 4,988 Kb – Source Zip File biopython-1.50.win32-py2.3.exe 1,228 Kb – Windows Installer for Python 2.3 and NumPy 1.1 biopython-1.50.win32-py2.4.exe 1,232 Kb – Windows Installer for Python 2.4 and NumPy 1.1 biopython-1.50.win32-py2.5.exe 1,232 Kb – Windows Installer for Python 2.5 and NumPy 1.1 biopython-1.50.win32-py2.6.exe 1,270 Kb – Windows Installer for Python 2.6 and NumPy 1.3 biopython-1.50b.tar.gz 4,788 Kb (April 3, 2009) biopython-1.50b.zip 5,250 Kb biopython-1.50b.win32-py2.3.exe 1,226 Kb – Windows Installer for Python 2.3 and NumPy 1.1 biopython-1.50b.win32-py2.4.exe 1,230 Kb – Windows Installer for Python 2.4 and NumPy 1.1 biopython-1.50b.win32-py2.5.exe 1,230 Kb – Windows Installer for Python 2.5 and NumPy 1.1 biopython-1.50b.win32-py2.6.exe 1,268 Kb – Windows Installer for Python 2.6 and NumPy 1.3 biopython-1.49.tar.gz 4,052 Kb (November 21, 2008) biopython-1.49.zip 4,498 Kb biopython-1.49.win32-py2.3.exe 1,111 Kb – Windows Installer for Python 2.3 and NumPy 1.1 biopython-1.49.win32-py2.4.exe 1,115 Kb – Windows Installer for Python 2.4 and NumPy 1.1 biopython-1.49.win32-py2.5.exe 1,115 Kb – Windows Installer for Python 2.5 and NumPy 1.1 biopython-1.49b.tar.gz 4,331 Kb (November 7, 2008) biopython-1.49b.zip 4,780 Kb biopython-1.49b.win32-py2.3.exe 1,109 Kb – Windows Installer for Python 2.3 and NumPy 1.1 biopython-1.49b.win32-py2.4.exe 1,113 Kb – Windows Installer for Python 2.4 and NumPy 1.1 biopython-1.49b.win32-py2.5.exe 1,114 Kb – Windows Installer for Python 2.5 and NumPy 1.1.Please note that Biopython 1.48 and older require the Numeric library, not its replacement NumPy. Windows installers for Python 2.4 and older are available from the Numerical Python website. A Windows installer for Numeric 24.2 for Python 2.5 is available here:Please note that Biopython 1.48 and older used mxTextTools 2.0 in some of the parsers. There were a few niggles with mxTextTools 3.0, so ideally install the older mxTextTools 2.0.

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