Nimfa
Nimfa
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pip install nimfa
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A Python module for nonnegative matrix factorization
View statistics for this project via Libraries.io , or by using our public dataset on Google BigQuery
Tags
matrix factorization,
nonnegative matrix factorization,
bioinformatics,
data mining,
machine learning
Nimfa is a Python module that implements many algorithms for nonnegative matrix factorization. Nimfa is distributed under the BSD license.
The project was started in 2011 by Marinka Zitnik as a Google Summer of Code project, and since
then many volunteers have contributed. See AUTHORS file for a complete list of contributors.
It is currently maintained by a team of volunteers.
Nimfa is tested to work under Python 2.7 and Python 3.4.
The required dependencies to build the software are NumPy >= 1.7.0,
SciPy >= 0.12.0.
For running the examples Matplotlib >= 1.1.1 is required.
This package uses setuptools, which is a common way of installing
python modules. To install in your home directory, use:
To install for all users on Unix/Linux:
For more detailed installation instructions,
see the web page http://ai.stanford.edu/~marinka/nimfa
Run alternating least squares nonnegative matrix factorization with projected gradients and Random Vcol initialization algorithm on medulloblastoma gene expression data::
View statistics for this project via Libraries.io , or by using our public dataset on Google BigQuery
Tags
matrix factorization,
nonnegative matrix factorization,
bioinformatics,
data mining,
machine learning
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