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Published online 2012 May 4. doi: 10.1371/journal.pone.0035863
Find articles by Kathleen C. Barnes
1
Department of Epidemiology, Bloomberg School of Public Health, The Johns Hopkins University, Baltimore, Maryland, United States of America
2
Division of Allergy and Clinical Immunology, Department of Medicine, The Johns Hopkins University, Baltimore, Maryland, United States of America
3
Serviço de Imunologia, Hospital Universitário Professor Edgard Santos, Salvador, Bahia, Brazil
4
Programa para o Controle da Asma e Rinite Alérgica na Bahia, Federal University of Bahia School of Medicine, Salvador, Bahia, Brazil
Received 2011 Oct 19; Accepted 2012 Mar 27.
This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
The 7 IL13 SNPs among 222 founders in the Brazilian study sample.
Abbreviations: SNP, single-nucleotide polymorphism; UTR, untranslated region; MAF, minor allele frequency; Chr, chromosome. Chromosomal position according to db126; major and minor alleles in Brazilian data before and after forward slash, respectively; ancestral allele according to db126 data underlined. Atopy-related SNPs are indicated in bold and tagging SNPs that are not atopy-related are in regular font.
Generalized Estimating Equation association tests for individual SNPs with tIgE levels (N = 572) and Schistosoma mansoni egg counts (N = 397) under the additive model.
Abbreviations: Dir, direction of association; pos, positive; neg, negative.
a log(10)-transformed values adjusted for age, sex, smoking, and helminthic infection status.
b log(10)-transformed values adjusted for age, sex, and low, medium and high exposure to infested water sources.
c P-values and direction of association with high values are given for the beta-coefficient for the minor allele under the additive model.
d P-values are statistically significant with α = 0.05 for atopy-related SNPs (bold) and α = 0.005 for tagging SNPs that are not atopy-related (unbolded).
QTDT association results for individual IL13 SNPs with tIgE levels and Schistosoma mansoni egg count.
Abbreviations: Dir, direction of association; pos, positive; neg, negative; N offspring, number of informative offspring over number of offspring evaluated; neg., negative; pos., positive; QTDT, quantitative transmission disequilibrium test; S.m. count, Schistosoma mansoni egg count per gram of fecal matter; SNP, single-nucleotide polymorphism; tIgE, total serum IgE.
a log(10)-transformed values adjusted for age, sex, smoking, and helminthic infection status.
b log(10)-transformed values adjusted for age, sex, and low, medium and high exposure to infested water sources.
c Likelihood ratio tests were compared to obtain tests of evidence of association in the presence of linkage for models where (1) means were considered as composed of covariate effects and between- and within-family components and (2) means were considered as composed of covariate effects and between-family components only. For both models, the variance was set to be composed of polygenic and individual environmental effects.
d P-values are statistically significant with α = 0.05 for atopy-related SNPs (bold) and α = 0.005 for tagging SNPs that are not atopy-related (unbolded).
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