Dating Gene Duplications
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NOTUNG: a program for dating gene duplications and . . .
PDF Notung: A Program for Dating Gene Duplications and . . .
[PDF] Notung: dating gene duplications using gene family . . .
(PDF) NOTUNG: A Program for Dating Gene Duplications and . . .
Phylogenetic Dating and Characterization of Gene . . .
PDF Notung: A Program for Dating Gene Duplications and . . .
NOTUNG: A Program for Dating Gene Duplications and . . .
(PDF) Notung: Dating Gene Duplications using Gene Family Trees
NOTUNG: A Program for Dating Gene Duplications and . . .
Large-Scale Gene and Ancient Genome Duplications . . .
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NOTUNG: a program for dating gene duplications and optimizing gene family trees . Large scale gene duplication is a major force driving the evolution of genetic functional innovation . Whole genome duplications are widely believed to have played an important role in the evolution of the maize, yeast, and vertebrate genomes .
www .cs .rutgers .edu › ~farach › pubs › NotungJCB .pdf
Running head: Dating Gene Duplications Keywords: Gene duplication , gene family, duplication /loss models, phylogeny, evolutionary tree 1 . Abstract Large scale gene duplication is a major force driving the evolution of genetic functional innovation .
Large scale gene duplication is a major force driving the evolution of genetic functional innovation . Whole genome duplications are widely believed to have played an important role in the evolution of the maize, yeast and vertebrate genomes . The use of evolutionary trees to analyze the history of gene duplication and estimate duplication times provides a powerful tool for studying this process .
single gene duplication to explain, while Figure 3(c) involves one gene duplication and one gene loss . In contrast, the tree shown in Figure 3(d) has three subfamilies resulting from tw o duplications
Our results are at odds with a recent study that used a similar approach, dating gene duplications by their phylogenetic position relative to speciation events (Friedman and Hughes 2003) . There are several differences between our methodology and that of Friedman and Hughes, but the main difference is the criterion for classifying gene duplications within speciation intervals .
www .cs .cmu .edu › ~durand › papers › ChenDurandFarach00 .pdf
Notung: A Program for Dating Gene Duplications and Optimizing Gene Family Trees Kevin Chen Department of Electrical Engineering and Computer Science, University of California, Berkeley, CA 94720 (kevinc@eecs .berkeley .edu) Dannie Durandy Department of Biological Sciences, Carnegie Mellon University, Pittsburgh, PA 15213
Large scale gene duplication is a major force driving the evolution of genetic functional innovation . Whole genome duplications are widely believed to have played an important role in the evolution of the maize, yeast, and vertebrate genomes . The use of evolutionary trees to analyze the history of gene duplication and estimate duplication times . . .
tatio nal metho d for dating gene duplications for . use in analyzing one suc h problem: reconstruct-ing the r ole o f gene duplication in genome evolu-tion . Our results are a set of to ol s called . . .
Large scale gene duplication is a major force driving the evolution of genetic functional innovation . Whole genome duplications are widely believed to have played an important role in the evolution . . . NOTUNG: A Program for Dating Gene Duplications and Optimizing Gene Family Trees | Journal of Computational Biology .
Several methods are commonly being used to date gene duplication events, the most notable of which are (1) absolute dating based on third codon or synonymous substitution rates, (2) absolute dating based on nonsynonymous substitution rates or protein-based distances, and (3) relative and absolute dating by the construction and analysis of phylogenetic trees .
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Dating Gene Duplications
