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Commensal bacteria in the intestine release enzymes to degrade and ferment dietary components, producing beneficial metabolites. However, the regulatory effects of microbial-derived enzymes on the intestinal m The intestinal microbiota plays a significant role in maintaining systemic and intestinal homeostasis, but can also influence diseases such as inflammatory bowel disease IBD and cancer. Certain bacterial spe Understanding the interaction between environmental conditions, crop yields, and soil health is crucial for sustainable agriculture in a changing climate. Management practices to limit disease are a balancing The ecosystems of marine ranching have enhanced marine biodiversity and ecological balance and have promoted the natural recovery and enhancement of fishery resources. The microbial communities of these ecosys The disease resistance phenotype is closely related to immunomodulatory function and immune tolerance and has far-reaching implications in animal husbandry and human health. Microbes play an important role in Volatile organic compounds VOCs released by plants can act as signaling molecules mediating ecological interactions. Therefore, the study of VOCs mediated intra- and interspecific interactions with downstrea Alterations in upper respiratory microbiomes have been implicated in shaping host health trajectories, including by limiting mucosal pathogen colonization. However, limited comparative studies of respiratory m Reciprocal exchanges of metabolites between phytoplankton and bacteria influence the fitness of these microorganisms which ultimately shapes the productivity of marine ecosystems. Recent evidence suggests that HIV-1 infection is characterized by a massive depletion of mucosal CD4 T cells that triggers a cascade of events ultimately linking gut microbial dysbiosis to HIV-1 disease progression and pathogenesis. The as Built environments BEs are typically considered to be oligotrophic and harsh environments for microbial communities under normal, non-damp conditions. However, the metabolic functions of microbial inhabitant Connecting the composition and function of industrial microbiomes is a major aspiration in microbial biotechnology. Here, we address this question in wine fermentation, a model system where the diversity and f Entomopathogenic fungal infection-induced dysbiosis of host microbiota offers a window into understanding the complex interactions between pathogenic fungi and host symbionts. Such insights are critical for en The microbial landscape within termite guts varies across termite families. The gut microbiota of lower termites LT is dominated by cellulolytic flagellates that sequester wood particles in their digestive v The rhizosphere microbiome is critical for promoting plant growth and mitigating soil-borne pathogens. However, its role in fighting soil-borne virus-induced diseases, such as wheat yellow mosaic virus WYMV Processing environments can be an important source of pathogenic and spoilage microorganisms that cross contaminate meat and meat products. The aim of this study was to characterize the microbiome of raw mater Ammonia-oxidizing archaea AOA of the phylum Thaumarchaeota mediate the rate-limiting step of nitrification and remove the ammonia that inhibits the aerobic metabolism of methanotrophs. However, the AOA that Progression of chronic lung disease may lead to the requirement for lung transplant LTx. Viruses, the majority of which are uncultivated, are among the most abundant biological entities on Earth. From altering microbial physiology to driving community dynamics, viruses are fundamental members of m Oral squamous cell carcinoma OSCC remains a major death cause in head and neck cancers, but the exact pathogenesis mechanisms of OSCC are largely unclear. Obesity, and in particular abdominal obesity, is associated with an increased risk of developing a variety of chronic diseases. Obesity, aging, and menopause are each associated with differential shifts in the Sulfate-reducing bacteria SRB are frequently encountered in anoxic-to-oxic transition zones, where they are transiently exposed to microoxic or even oxic conditions on a regular basis. This can be marine tid Cereal diseases caused by insect-transmitted viruses are challenging to forecast and control because of their intermittent outbreak patterns, which are usually attributed to increased population densities of v The increase in metagenome-assembled genomes MAGs has advanced our understanding of the functional characterization and taxonomic assignment within the human microbiome. However, MAGs, as population consensu Metagenomics is a powerful approach to study environmental and human-associated microbial communities and, in particular, the role of viruses in shaping them. Viral genomes are challenging to assemble from met The human gut microbiome produces and consumes a variety of compounds that interact with the host and impact health. Succinate is of particular interest as it intersects with both host and microbiome metabolis Soil nutrient status and soil-borne diseases are pivotal factors impacting modern intensive agricultural production. The interplay among plants, soil microbiome, and nutrient regimes in agroecosystems is esse The potential promise of the microbiome to ameliorate a wide range of societal and ecological challenges, from disease prevention and treatment to the restoration of entire ecosystems, hinges not only on micro Cover cropping is an agricultural practice that uses secondary crops to support the growth of primary crops through various mechanisms including erosion control, weed suppression, nutrient management, and enha The basis of this increased vulnerability is un Akkermansia muciniphila , a next-generation probiotic, is known as a cornerstone regulating the gut-organ axis in various diseases, but the underlying mechanism remains poorly understood. Here, we revealed the neu Colorectal cancer CRC risk is strongly affected by dietary habits with red and processed meat increasing risk, and foods rich in dietary fibres considered protective. Dietary habits also shape gut microbiota Dietary fibers can alter microbial metabolic output in support of healthy immune function; however, the impact of distinct fiber sources and immunomodulatory effects beyond short-chain fatty acid production ar Intake of dietary fiber is associated with a reduced risk of inflammatory bowel disease. The Andean Altiplano hosts a repertoire of high-altitude lakes with harsh conditions for life. These lakes are undergoing a process of desiccation caused by the current climate, leaving terraces exposed to ext Lactobacillus acidophilus is a commensal urinary bacterium found more abundantly in healthy individuals than in stone patients. Hence, it has been proposed to play an inhibitory role in kidney stone disease KSD In this editorial, we discuss the need for a new, long-term strategy for managing human excrement feces and urine to facilitate health equity and promote environmental sustainability. Human excrement compost Trees are associated with a broad range of microorganisms colonising the diverse tissues of their host. However, the early dynamics of the microbiota assembly microbiota from the root to shoot axis and how it The microbiota and metabolites in the gastrointestinal tracts of female animals at different reproductive periods are very important to the growth, development, and health of themselves and their offspring. The commercialization of space travel will soon lead to many more people living and working in unique built environments similar to the International Space Station, which is a specialized closed environment th Clean energy hydrogen H 2 produced from abundant lignocellulose is an alternative to fossil energy. As an essential influencing factor, there is a lack of comparison between constant temperatures 35, 55 and Plants have evolved various defense mechanisms against insect herbivores, including the formation of physical barriers, the synthesis of toxic metabolites, and the activation of phytohormone responses. Next-generation sequencing NGS approaches have revolutionized gut microbiome research and can provide strain-level resolution, but these techniques have limitations in that they are only semi-quantitative, s Plant-associated microorganisms can be found in various plant niches and collectively comprise the plant microbiome. The plant microbiome assemblages have been extensively studied, primarily in model species. Microbial anaerobic metabolism is a key driver of biogeochemical cycles, influencing ecosystem function and health of both natural and engineered environments. However, the temporal dynamics of the intricate i To adapt to constantly changing environments, ancient gymnosperms have coevolved with diverse endophytic fungi that are essential for the fitness and adaptability of the plant host. However, the effect of sex Environmental reservoirs of antibiotic resistance pose a threat to human and animal health. Aquatic biofilms impacted by wastewater effluent WW are known environmental reservoirs for antibiotic resistance; h Our facial skin hosts millions of microorganisms, primarily bacteria, crucial for skin health by maintaining the physical barrier, modulating immune response, and metabolizing bioactive materials. Aging signif Animal Microbiome. Environmental Microbiome. Citation Impact Journal Impact Factor: Speed Submission to first editorial decision median days : 21 Submission to acceptance median days : Skip to main content. Search all BMC articles Search. Citation: Microbiome 12 Content type: Research Published on: 21 October Authors: Merel van Gogh, Jonas M. Viveen, Sofie Bosch, Nanne K. Verheijden, Karijn P. Suijkerbuijk, Eelco C. Content type: Methodology Published on: 21 October Mable and Umer Zeeshan Ijaz. Davenport, Christine M. Seroogy, James E. Gern, Lindsay R. Kalan and Cameron R. Content type: Research Published on: 18 October Authors: Abeeha Khalil, Anna R. Content type: Research Published on: 17 October Leung, Justin Y. Mason and Patrick K. Content type: Research Published on: 15 October Vera, Gaku Tokuda and Andreas Brune. Content type: Research Published on: 9 October Authors: Christian Martin, Kathleen S. Mahan, Talia D. Wiggen, Adam J. Gilbertsen, Marshall I. Hertz, Ryan C. Hunter and Robert A. Authors: James C. Kosmopoulos, Katherine M. Klier, Marguerite V. Langwig, Patricia Q. Tran and Karthik Anantharaman. Content type: Research Published on: 7 October Moore, Sarah P. Content type: Research Published on: 5 October Authors: Mohamed Gaber, Adam S. Wilson, Amy E. Millen, Kathleen M. Hovey, Michael J. Ochs-Balcom and Katherine L. Content type: Research Published on: 4 October Authors: Stefan Dyksma and Michael Pester. Authors: Lukasz M. Szydlowski, Alper A. Bulbul, Anna C. Simpson, Deniz E. Kaya, Nitin K. Singh, Ugur O. Content type: Research Published on: 3 October Content type: Research Published on: 2 October Authors: Annika Jochheim, Florian A. Content type: Software Published on: 1 October Content type: Research Published on: 30 September Content type: Research Published on: 28 September Authors: Kacie T. Kajihara and Nicole A. Content type: Review Published on: 28 September Authors: Valerie A. Seitz, Bridget B. McGivern, Mikayla A. Borton, Jacqueline M. Chaparro, Meagan E. Schipanski, Jessica E. Prenni and Kelly C. Authors: Nicole H. Content type: Research Published on: 27 September Authors: Erica T. Content type: Research Published on: 23 September Content type: Research Published on: 19 September Adam, Sarah P. Esser, Nathalie A. Cabrol, Alexander J. Content type: Research Published on: 17 September Gregory Caporaso. Content type: Editorial Published on: 16 September Authors: F. Fracchia, F. Guinet, N. Engle, T. Tschaplinski, C. Veneault-Fourrey and A. Content type: Research Published on: 12 September Meyer, John M. Horack and Karen C. Content type: Research Published on: 10 September Content type: Research Published on: 9 September Frese, Michael G. Content type: Methodology Published on: 7 September Content type: Research Published on: 7 September Authors: Mustafa Attrah, Milo R. Content type: Research Published on: 6 September Content type: Research Published on: 5 September Submit manuscript. Follow Follow us on Twitter. More about our metrics. Microbiome ISSN: Contact us General enquiries: journalsubmissions springernature.

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